Differences

This shows you the differences between two versions of the page.

--- services:cluster:slurm [2021/09/15 11:48] – add syntax highlighting to example job behrmj87
+++ services:cluster:slurm [2024/04/26 14:36] (current) – hoffmac00
@@ Line 22: / Line 22: @@
 #!/bin/bash
-#SBATCH --job-name=job1                # Job name, will show up in squeue output
+#SBATCH --job-name=example_job         # Job name, will show up in squeue output
-#SBATCH --ntasks=1                     # Number of cores
+#SBATCH --ntasks=1                     # Number of individual tasks, usually 1 except when using MPI, etc.
-#SBATCH --nodes=1                      # Ensure that all cores are on one machine
+#SBATCH --cpus-per-task=1              # Number of CPUs
+#SBATCH --nodes=1                      # Number of nodes, usaully 1 except when using MPI, etc.
 #SBATCH --time=0-00:01:00              # Runtime in DAYS-HH:MM:SS format
 #SBATCH --mem-per-cpu=100              # Memory per cpu in MB (see also --mem)
-#SBATCH --output=job1_%j.out           # File to which standard out will be written
+#SBATCH --output=job_%j.out            # File to which standard out will be written
-#SBATCH --error=job1_%j.err            # File to which standard err will be written
+#SBATCH --error=job_%j.err             # File to which standard err will be written
 #SBATCH --mail-type=END                # Type of email notification- BEGIN,END,FAIL,ALL
 #SBATCH --mail-user=j.d@fu-berlin.de   # Email to which notifications will be sent
@@ Line 47: / Line 48: @@
 <code>
-dreger@sheldon-ng:..dreger/quickstart> **pwd**
+dreger@sheldon-ng:..dreger/quickstart> pwd
 /scratch/dreger/quickstart
-dreger@sheldon-ng:..dreger/quickstart> **sbatch -p test job1.sh**
+dreger@sheldon-ng:..dreger/quickstart> sbatch -p test example_job.sh
 Submitted batch job 26495
-dreger@sheldon-ng:..dreger/quickstart> **squeue -l -u dreger**
+dreger@sheldon-ng:..dreger/quickstart> squeue -l -u dreger
 Sun Jun 29 23:02:50 2014
              JOBID PARTITION     NAME     USER    STATE       TIME TIMELIMIT  NODES NODELIST(REASON)
       test     job1   dreger  RUNNING       0:24      1:00      1 x001
-dreger@sheldon-ng:..dreger/quickstart> **cat job1_26495.out**
+dreger@sheldon-ng:..dreger/quickstart> cat job_26495.out
-JobId=26495 Name=job1
+JobId=26495 Name=example_job
    UserId=dreger(4440) GroupId=fbedv(400)
    Priority=10916 Account=fbedv QOS=normal
@@ Line 73: / Line 74: @@
    Features=(null) Gres=(null) Reservation=(null)
    Shared=OK Contiguous=0 Licenses=(null) Network=(null)
-   Command=/clusterfs/scratch/dreger/quickstart/job1.sh
+   Command=/clusterfs/scratch/dreger/quickstart/example_job.sh
    WorkDir=/clusterfs/scratch/dreger/quickstart