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--- services:cluster:slurm [2014/06/29 20:38] – created dreger
+++ services:cluster:slurm [2014/06/29 21:09] – dreger
@@ Line 14: / Line 14: @@
   - Submit your job script using the ''sbatch'' command
-Consider the following example of a very basic job script named ''job1.sh'':
+==== Example of a very basic job script ====
+Consider the following bash script with #SBATCH comments, which tell Slurm what resources you need:
 <xterm>
@@ Line 34: / Line 36: @@
 # run your program...
 hostname
+# wait some time...
+sleep 50
 </xterm>
@@ Line 42: / Line 47: @@
 /scratch/dreger/quickstart
 dreger@sheldon-ng:..dreger/quickstart> **sbatch -p test job1.sh**
-Submitted batch job 26494
+Submitted batch job 26495
-dreger@sheldon-ng:..dreger/quickstart> **cat job1_26494.out**
+dreger@sheldon-ng:..dreger/quickstart> **squeue -l -u dreger**
-JobId=26494 Name=job1
+Sun Jun 29 23:02:50 2014
+             JOBID PARTITION     NAME     USER    STATE       TIME TIMELIMIT  NODES NODELIST(REASON)
+      test     job1   dreger  RUNNING       0:24      1:00      1 x001
+dreger@sheldon-ng:..dreger/quickstart> **cat job1_26495.out**
+JobId=26495 Name=job1
    UserId=dreger(4440) GroupId=fbedv(400)
    Priority=10916 Account=fbedv QOS=normal
    JobState=RUNNING Reason=None Dependency=(null)
    Requeue=1 Restarts=0 BatchFlag=1 ExitCode=0:0
-   RunTime=00:00:00 TimeLimit=00:01:00 TimeMin=N/A
+   RunTime=00:00:01 TimeLimit=00:01:00 TimeMin=N/A
-   SubmitTime=2014-06-29T22:37:44 EligibleTime=2014-06-29T22:37:44
+   SubmitTime=2014-06-29T23:02:26 EligibleTime=2014-06-29T23:02:26
-   StartTime=2014-06-29T22:37:44 EndTime=2014-06-29T22:38:44
+   StartTime=2014-06-29T23:02:26 EndTime=2014-06-29T23:03:26
    PreemptTime=None SuspendTime=None SecsPreSuspend=0
-   Partition=test AllocNode:Sid=sheldon-ng:26448
+   Partition=test AllocNode:Sid=sheldon-ng:27448
    ReqNodeList=(null) ExcNodeList=(null)
    NodeList=x001
@@ Line 66: / Line 75: @@
 x001
 </xterm>
+==== Example of a GROMACS job script for one node using multithreading ====
+TBD
+==== Example of a GROMACS job script for multiple nodes using MPI ====
+TBD