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services:cluster:slurm [2014/06/29 21:01] – [Quick Start for the impatient] dregerservices:cluster:slurm [2014/06/29 21:09] – dreger
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   - Submit your job script using the ''sbatch'' command   - Submit your job script using the ''sbatch'' command
  
-Consider the following example of a very basic job script named ''job1.sh'':+==== Example of a very basic job script ==== 
 + 
 +Consider the following bash script with #SBATCH comments, which tell Slurm what resources you need:
  
 <xterm> <xterm>
Line 45: Line 47:
 /scratch/dreger/quickstart /scratch/dreger/quickstart
 dreger@sheldon-ng:..dreger/quickstart> **sbatch -p test job1.sh** dreger@sheldon-ng:..dreger/quickstart> **sbatch -p test job1.sh**
-Submitted batch job 26494 +Submitted batch job 26495 
-dreger@sheldon-ng:..dreger/quickstart> **cat job1_26494.out** +dreger@sheldon-ng:..dreger/quickstart> **squeue -l -u dreger** 
-JobId=26494 Name=job1+Sun Jun 29 23:02:50 2014 
 +             JOBID PARTITION     NAME     USER    STATE       TIME TIMELIMIT  NODES NODELIST(REASON) 
 +             26495      test     job1   dreger  RUNNING       0:24      1:00      1 x001 
 +dreger@sheldon-ng:..dreger/quickstart> **cat job1_26495.out** 
 +JobId=26495 Name=job1
    UserId=dreger(4440) GroupId=fbedv(400)    UserId=dreger(4440) GroupId=fbedv(400)
    Priority=10916 Account=fbedv QOS=normal    Priority=10916 Account=fbedv QOS=normal
    JobState=RUNNING Reason=None Dependency=(null)    JobState=RUNNING Reason=None Dependency=(null)
    Requeue=1 Restarts=0 BatchFlag=1 ExitCode=0:0    Requeue=1 Restarts=0 BatchFlag=1 ExitCode=0:0
-   RunTime=00:00:00 TimeLimit=00:01:00 TimeMin=N/A +   RunTime=00:00:01 TimeLimit=00:01:00 TimeMin=N/A 
-   SubmitTime=2014-06-29T22:37:44 EligibleTime=2014-06-29T22:37:44 +   SubmitTime=2014-06-29T23:02:26 EligibleTime=2014-06-29T23:02:26 
-   StartTime=2014-06-29T22:37:44 EndTime=2014-06-29T22:38:44+   StartTime=2014-06-29T23:02:26 EndTime=2014-06-29T23:03:26
    PreemptTime=None SuspendTime=None SecsPreSuspend=0    PreemptTime=None SuspendTime=None SecsPreSuspend=0
-   Partition=test AllocNode:Sid=sheldon-ng:26448+   Partition=test AllocNode:Sid=sheldon-ng:27448
    ReqNodeList=(null) ExcNodeList=(null)    ReqNodeList=(null) ExcNodeList=(null)
    NodeList=x001    NodeList=x001
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 x001 x001
 </xterm> </xterm>
 +
 +==== Example of a GROMACS job script for one node using multithreading ====
 +
 +TBD
 +
 +==== Example of a GROMACS job script for multiple nodes using MPI ====
 +
 +TBD
services/cluster/slurm.txt · Last modified: 2015/06/16 12:53 by dreger
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