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--- services:cluster:slurm [2014/06/29 21:05] – [Quick Start for the impatient] dreger
+++ services:cluster:slurm [2015/04/16 08:17] – dreger
@@ Line 14: / Line 14: @@
   - Submit your job script using the ''sbatch'' command
-===== Example of a very basic job script =====
+==== Example of a very basic job script ====
-Consider the following example of a very basic job script named ''job1.sh'':
+Consider the following bash script with #SBATCH comments, which tell Slurm what resources you need:
 <xterm>
@@ Line 40: / Line 40: @@
 sleep 50
 </xterm>
+Please note that your job will be killed by the queueing system if it tries to use more memory than requested or if it runs longer than the time specified in the batch script. So to be on the safe side you can set these values a litte bit higher. If you set the values to high, your job might not start because there are not enough resources (e.g. no machine has that amount of memory you are asking for).
 Now just submit your job script using ''sbatch job1.sh'' from the command line. Please try to run jobs directly from the /scratch///username// cluster wide filesystem to lower the load on the /home server. For testing purposes set the runtime of your job below 1 minute and submit it to the test partition by adding ''-p test'' to sbatch:
@@ Line 75: / Line 77: @@
 x001
 </xterm>
+==== Example of a GROMACS job script for one node using multithreading ====
+TBD
+==== Example of a GROMACS job script for multiple nodes using MPI ====
+TBD